Naming Journal Entries
Keeping Names Simple & Standard
I'm really writing this to make things easier for me. People have adopted a number of formats for naming these pages and most would work fine in principle if we all adopted the same kind of format. However, with everyone using a different format there is lots of potential for confusion.
A Wiki being as free-form as it is, there is lots of potential for anarchy breaking out. The challenge is to use the freedom the Wiki offers but not be sucked into a black hole of confusion.
A Few Simple Rules
I propose that the process of creating a journal entry be done in the following way:
Step One: Create A New Literature Reference
1.Find the paper you want to review (it might be assigned). When picking the paper make sure that it matches the prompt appropriately so you stay on topic.
2.Enter the PubMed reference in alphabetical order in the Literature Database

 
Example:
  
Asturias FJ. 2004. RNA polymerase II structure, and organization of the preinitiation complex. Curr Opin Struct Biol. 14:121-9.

3.At the end of the Literature Database entry insert a hyperlink to another page that will also hold the PubMed reference so that it will be possible to cite the paper within the Wiki.

 
Examples:
  
One Author: Asturias FJ. 2004. RNA polymerase II structure, and organization of the preinitiation complex. Curr Opin Struct Biol. 14:121-9. (Asturias 2004)
  
Two Authors: Asturias FJ, Craighead JL. 2003. RNA polymerase II at initiation. Proc Natl Acad Sci U S A. 100:6893-5. (Asturias and Craighead 2003)
  
More Than Two Authors: Chua G, Robinson MD, Morris Q, Hughes TR. 2004. Transcriptional networks: reverse-engineering gene regulation on a global scale. Curr Opin Microbiol. 7:638-46. (Chua et al 2004)

4.Enter "Author: [your name]" at the bottom of the page to indicate you made this citation.
5.Click on the hyperlinked question mark ("?") and go to the new page you have just referenced. There paste another copy of the PubMed reference and, if it is available, a link to the PDF of the paper.
Step Two: Create A Journal Entry
Each student should have a page to act as the index for journal entries. This page for Philip Farabaugh, for example, would be named "Journal of Philip Farabaugh"
1.Starting from your journal index page, you should create a new journal entry page for each paper. Name each new journal entry according to the following example:
 
Philip Farabaugh's single journal entry for the first week would be called:
  
"Philip Farabaugh JE1"
 
If the second week he had three to write they would be called:
  
"Philip Farabaugh JE2a"
  
"Philip Farabaugh JE2b"
 
and
  
"Philip Farabaugh JE2c"
2.Use that new page to create a journal entry using the Journal Template form.
3.Have all this done before you come to class on the day we will discuss the papers.

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Tuesday November 24, 2009 01:33:10 PM -0500