UMBC An Honors University in Maryland
UMBC Biological Sciences
departmental publications
2006

C.M. Hofmann, T.W. Cronin, and K.E. Omland. 2006. Using spectral data to reconstruct evolutionary changes in coloration: carotenoid color evolution in New World orioles. Evolution 60:1680-1691. [PDF]

Ascano MT, Smith WC, Gregurick SK and Robinson PR.  (2006).  Arrestin residues involved in the functional binding of arrestin to phosphorylated, photolyzed rhodopsin.  Mol. Vis. 12:1516-1525. [Abstract]

Omland, K. E. and Kondo, B. 2006. Phylogenetic studies of plumage evolution and speciation in New World Orioles (Icterus). Current Zoology 52(supl): 320-326. [Abstract] [PDF]

Bethel CR, Faith D, Li X, Guan B, Hicks JL, Lan F, Jenkins RB, Bieberich CJ and De Marzo, AM. 2006. Decreased NKX3.1 protein expression in focal prostatic atrophy, prostatic intraepithelial neoplasia, and adenocarcinoma: association with gleason score and chromosome 8p deletion. Cancer Res., 66:10683-10690. [Abstract] [Text] [PDF]

J. B. Weidhaas, D. M. Eisenmann, J.M. Holub and S. Nallur (2006). A Conserved EGFR/Ras/MAPK Pathway Regulates DNA Damage-Induced Cell Death Post-irradiation in Radelegans. Cancer Research 66: 10434-10438. [Text]

Farabaugh PJ, Kramer E, Vallabhaneni H, Raman A. Evolution of +1 programmed frameshifting signals and frameshift-regulating tRNAs in the order Saccharomycetales. J Mol Evol. 2006 63:545-561. [Abstract] [PDF]

Gleason, J. E., E. A. Szyleyko and D. M. Eisenmann (2006) Multiple redundant Wnt signaling components function in two processes during C. elegans vulval development. Developmental Biology 298:442-457. [Text]

Hong E., and Brewster R. (2006). N-cadherin is required for the polarized cell behaviors that drive neurulation in the zebrafish. Development 133:3895-3905. [Abstract] [PDF]

Wagmaister, J.A., Miley, G.R., Morris, C.A., Gleason, J. E., Miller, L.M., Kornfeld, K., and D. M. Eisenmann. (2006). Identification of cis-regulatory elements from the C. elegans Hox gene lin-39 required for embryonic expression and for regulation by the transcription factors LIN-1, LIN-31 and LIN-39. Developmental Biology 297: 550-565. [Text]

Lesser, K., I. Paiusi and Leips, J.  2006. Naturally occurring genetic variation in the age-specific immune response of Drosophila melanogaster. Aging Cell, 5:293-295.

T.W. Cronin, E.J. Warrant, and B. Greiner.  2006.  Celestial polarization patterns during twilight. Applied Optics 45:5582-5589. [Abstract]

Restrepo, D., Lin, W., Salcedo, E., Yamazaki, K., and Beauchamp, G. (2006).  Odortypes and MHC peptides: Complementary chemosignals of MHC haplotype? Trends in Neuroscience 29:604-609.

[Abstract] [PDF]

Spady TC, Parry JW, Robinson PR, Hunt DM, Bowmaker JK and Carleton KL.  (2006).  Evolution of the cichlid visual palette through ontogenetic subfunctionalization of the opsin gene arrays.  Mol. Biol. Evol. 23:1538-1547. [Abstract]

Ascano MT, Smith WC, Gregurick SK and Robinson PR.  (2006).  Arrestin residues involved in the functional binding of arrestin to phosphorylated, photolyzed rhodopsin.  Mol. Vis. 12:1516-1525. [Abstract]

Hofmann, C.M., Cronin, T. W. and Omland, K.E.  2006.  Using spectral data to reconstruct evolutionary changes in coloration: carotenoid color evolution in New World orioles. Evolution 60: 1680-1691. [Abstract] [PDF]

Raman A, Guarraia C, Taliaferro D, Stahl G, Farabaugh PJ. An mRNA sequence derived from a programmed frameshifting signal decreases codon discrimination during translation initiation. RNA. 2006 12:1154-1160. [Abstract] [PDF]

Hughes, K.A. and Leips, J.  2006.   A genetic analysis of male mating success and sperm competition in Drosophila melanogaster. Evolution 60:1427-1434.

Duncan, L, Nishii, I., Howard, A, Kirk, D., and Miller, S.M.  (2006) Orthologs and paralogs of regA, a master cell-type regulatory gene in Volvox carteri. Curr. Genet. 50:61-72. [Abstract]

Newman, LA and Robinson, PR.  (2006) The visual pigments of the West Indian manatee (Trichechus manatus).  Vision Res. 46:3326-3330. [Abstract]

Marbach-Ad, G. and P.G. Sokolove. 2006. Encouraging out-of-class student questions in an introductory biology course. Journal of Student Centered Learning, 3:29-36.

T.W. Cronin.  2006.  Invertebrate vision in water.  In:  Invertebrate Vision (E. Warrant and D.E. Nilsson, eds).  Cambridge University Press, Cambridge UK, pp. 211-249.

J. B. Weidhaas, D. M. Eisenmann, J.M. Holub and S. Nallur (2006). A C. elegans tissue model of radiation-induced reproductive cell death. Proceedings National Academy of Sciences 103: 9946-9951. [Text]

Nickle B, Wilkie SE, Cowing JA, Hunt DM, and Robinson PR.  (2006).  Vertebrate opsins belonging to different classes vary in constitutively active properties resulting from salt-bridge mutations.  Biochemistry 45:7307-7313. [Abstract]

Carbone, M.A., Jordan, K.W., Lyman, R.F., Harbison, S.T., Leips, J., Morgan, T.J., DeLuca, M., Awadalla, P. and Mackay, T.F.C.  2006.  Phenotypic variation and natural selection at Catsup, a pleiotropic quantitative trait gene in Drosophila. Current Biology, 16:912-919

Van Rijn, J., Y. Tal and H. J. Schreier. (2006) Denitrification in recirculating systems: theory and applications. Aquacultural Engineering 34: 364-376. [Abstract]

Cheng, Q., Balzer, E., Yoshida, M., Wong, J.C., and Miller, S.M.  (2006)  Effect of histone deactylase inhibitors on tubulin acetylation and development in Volvox carteri.  J. Phycol. 42:417-22. [Abstract]

Cheng, Q., Hallmann, A., Edwards, L., and Miller, S.M.  (2006)  Characterization of a heat-shock inducible hsp70 gene of the green alga Volvox carteriGene 371:112-120. [Abstract]

Shah, I.M. and R.E. Wolf, Jr. 2006. Inhibition of Lon-dependent degradation of the Escherichia coli transcription activator SoxS by interaction with “soxbox” DNA or RNA polymerase. Mol. Microbiol. 60:199-208.
[Abstract]

Li, X. Maghami, S., and Bieberich, C. J. (2006) The prostate tumor suppressor NKX3.1 is regulated by protein kinase CK2, Mol. Cell. Biol 26(8):3008-17. [Abstract] [Text] [PDF]

Leips, J., Gilligan, P. and Mackay, T.F.C. 2006.  Quantitative trait loci with age-specific effects on fecundity in Drosophila melanogaster. Genetics 172:1595-1605.

Shah, I.M. and R. E. Wolf, Jr. 2006. Sequence requirements for Lon-dependent degradation of the Escherichia coli transcription activator SoxS: identification of the SoxS residues critical to proteolysis and specific inhibition of in vitro degradation by a peptide comprised of the N-terminal 21 amino acid residues. J. Mol. Biol., 357:718-731. [Abstract]

Omland, K. E. and Hofmann, C. M.  2006.  Adding color to the past: ancestral state reconstruction of bird coloration.  Pp. 417-454. in G. E. Hill and K. J. McGraw eds.  Bird Coloration Volume 2: Function and Evolution  Harvard University Press. [PDF]

Omland, K. E., Baker, J. M. and Peters J. L. 2006. Genetic signatures of intermediate divergence: population history of Old and New World Holarctic ravens (Corvus corax). Molecular Ecology 15: 795-808. [Abstract] [PDF]

Wagmaister, J.A., Gleason, J. E., and D. M. Eisenmann. 2006. Transcriptional upregulation of the C. elegans Hox gene lin-39 during vulval cell fate specification. Mechanism of Development 123: 135-150. [Text]

Salas-Marco J, Fan-Minogue H, Kallmeyer AK, Klobutcher LA, Farabaugh PJ, Bedwell DM. Distinct paths to stop codon reassignment by the variant-code organisms Tetrahymena and Euplotes. Mol Cell Biol. 2006 26:438-447. [Abstract] [Text] [PDF]

Bunt, S.K., Sinha, P., Clements, V.K., Leips, J., and Ostrand-Rosenberg, S. 2006.  Inflammation induces myeloid-derived suppressor cells that facilitate tumor progression. Journal of Immunology 176:284-290.

Bunt SK, Sinha P, Clements VK, Leips J and Ostrand-Rosenberg S. Inflammation induces myeloid-derived suppressor cells that facilitates tumor progression. J. Immunology 2006; 176 (1): 284-290. [Abstract] [Text] [PDF]

Bunt SK, Sinha P Clements VK, Leips J and Ostrand-Rosenberg S.  2006.  Inflammation induces myeloid-derived suppressor cells that facilitate tumor progression.  J. Immunol. 176:284-290. [Abstract]

Thompson JA, Dissanayake SK, Ksander BR, Knutson KL, Disis ML and Ostrand-Rosenberg S.  2006.  Tumor cells transduced with the MHC class II Transactivator and CD80 activate tumor-specific CD4+ T cells whether or not they are silenced for invariant chain.  Cancer Res. 66:1147-1154. [Abstract]

Baker, J. M., and Omland, K. E. 2006. Canary Island ravens (Corvus corax tingitanus) have distinct mtDNA. Ibis 148: 174-178. [Abstract] [PDF]

Dooling, R. J. & Lohr, B. 2006. Auditory temporal resolution in the zebra finch (Taeniopygia guttata): a model of enhanced temporal acuity. Ornithological Science 5: 15-22.

Lohr, B., Dooling, R.J., & Bartone, S. 2006. The discrimination of temporal fine structure in call-like harmonic stimuli by birds. Journal of Comparative Psychology 120: 239-251.

Gill, D.E., Blank, P., Parks, J., Guerard, J.B., Lohr, B., Schwartzman, E., Gruber, J.G., Dodge, G., Rewa, C.A., & Sears, H.F. 2006. Plants and birds on a CRP restored grasslands in Maryland. Wildlife Society Bulletin 34: 944-956.