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Daniele Fabris
Associate Professor
Turner, K. B.; Hagan, N. A..; Fabris, D. “Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Y-RNA”, Nucleic Acids Res. 34, 1305-1316 (2006). Fisher, R.J.; Fivash, M.J.; Stephen, A.G.; Hagan, N.A.; Shenoy, S.R.; Medaglia, M.V.; Smith, L.R.; Worthy, K.M.; Simpson, J.T.; Shoemaker, R.; McNitt, K.L.; Johnson, D.J.; Hixson, C.V.; Gorelick, R.J.; Fabris, D.; Henderson, L.E.; Rein, A. “Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides”, Nucleic Acids Res. 34, 472-484 (2006). Rait, V. K.; Zhang, Q.; Fabris, D.; Mason, J. T.; O’Leary, T. J. “Conversions of formaldehyde-modified 2´-deoxyadenosine 5´-monophosphate in conditions modeling formalin-fixed tissue dehydration” J. Histochem. Cytochem. 54, 301-310 (2006). Turner, K. B.; Hagan, N. A.; Kohlway, A.; Fabris, D. “Mapping noncovalent ligand binding to stemloop domains of the HIV-1 packaging signal by tandem mass spectrometry” invited contribution to J. Am. Soc. Mass Spectrom. 17, 1401-1411 (2006), journal cover. Zhang, Q.; Yu, E. T.; Kellersberger, K. A.; Crosland, E.; Fabris, D. “Toward building a database of bifunctional probes for the MS3D investigation of nucleic acids structures” invited contribution to J. Am. Soc. Mass Spectrom. 17, 1570-1581 (2006). Hagan, N. A. and Fabris, D. “Dissecting the protein-RNA and RNA-RNA interactions in the nucleocapsid-mediated dimerization and isomerization of HIV-1 stemloop 1” J. Mol. Biol. 365, 396-410 (2007). Fabris, D.; Chaudhari, P.; Hagan, N. A.; Turner, K. B. “Functional Investigations of Retroviral Protein-RNA Complexes by Nanospray-FTICR Mass Spectrometry” Eur. J. Mass Spectrom. 13, 29-33 (2007). Turner, K. B.; Hagan, N. A.; Fabris, D. “Understanding the isomerization of the HIV-1 dimerization initiation domain by the nucleocapsid protein” J. Mol. Biol. 369, 812-828 (2007). Stephen, A. G.; Datta, S. A. K.; Worthy, K. M.; Bindu, L.; Fivash, M.J.; Turner, K. B.; Fabris, D.; Rein, A.; Fisher, R.J. “Measuring the binding stoichiometry of HIV-1 Gag to very-low-density oligonucleotide surfaces using plasmon resonance spectroscopy” J. Biomol. Tech. 18, 259-266 (2007). Turner, K. B.; Brinson, R. G.; Yi-Brunozzi, H. Y.; Rausch, J. W.; Miller, J. T. Le Grice, S. F. J.; Marino, J. P.; Fabris, D. “Recognition of HIV-1 Polypurine Tract RNA:DNA Hybrid by Classic Nucleic Acid Ligands” Nucleic Acids Res. 36, 2799-2810 (2008). Zhang, Q.; Crosland, E.; Fabris, D. “Nested Arg-specific bifunctional crosslinkers for MS-based structural analysis of proteins and protein assemblies” invited contribution to Anal. Chim. Acta (2008) in press. Yu, E. T.; Hawkins, A.; Eaton, J.; Fabris, D. “MS3D structural elucidation of the HIV-1 packaging signal” Proc. Natl. Acad. Sci. U.S.A. (2008) in press. Holland, R.; Hawkins, A. E.; Eggler, A.; Mesecar, A.; Fabris, D.; Fishbein, J. C. “Prospective Type 1 and Type 2 Disulfides of Keap1 Protein” Chem. Res. Toxicol. (2008) in press. |
