Synthetic Gene DataBase
 

Synthetic Gene 159


 
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Field NameNatural GeneSynthetic Gene
SGDB Gene ID147159
GenBank AccessionX54939
GenBank GI40272
Gene NamecryIA(b)Ubi-cryIA(b)
Gene Length (bp)34680
SpeciesBacillus thuringiensisOryza sativa
StrainsHD133Leaves
CDSatggataacaatccgaacatcaatgaatgcattccttataattgtttaagtaaccctgaa
gtagaagtattaggtggagaaagaatagaaactggttacaccccaatcgatatttccttg
tcgctaacgcaatttcttttgagtgaatttgttcccggtgctggatttgtgttaggacta
gttgatataatatggggaatttttggtccctctcaatgggacgcatttcttgtacaaatt
gaacagttaattaaccaaagaatagaagaattcgctaggaaccaagccatttctagatta
gaaggactaagcaatctttatcaaatttacgcagaatcttttagagagtgggaagcagat
cctactaatccagcattaagagaagagatgcgtattcaattcaatgacatgaacagtgcc
cttacaaccgctattcctctttttgcagttcaaaattatcaagttcctcttttatcagta
tatgttcaagctgcaaatttacatttatcagttttgagagatgtttcagtgtttggacaa
aggtggggatttgatgccgcgactatcaatagtcgttataatgatttaactaggcttatt
ggcaactatacagatcatgctgtacgctggtacaatacgggattagagcgtgtatgggga
ccggattctagagattggataagatataatcaatttagaagagaattaacactaactgta
ttagatatcgtttctctatttccgaactatgatagtagaacgtatccaattcgaacagtt
tcccaattaacaagagaaatttatacaaacccagtattagaaaattttgatggtagtttt
cgaggctcggctcagggcatagaaggaagtattaggagtccacatttgatggatatactt
aacagtataaccatctatacggatgctcatagaggagaatattattggtcagggcatcaa
ataatggcttctcctgtagggttttcggggccagaattcacttttccgctatatggaact
atgggaaatgcagctccacaacaacgtattgttgctcaactaggtcagggcgtgtataga
acattatcgtccactttatatagaagaccttttaatatagggataaataatcaacaacta
tctgttcttgacgggacagaatttgcttatggaacctcctcaaatttgccatccgctgta
tacagaaaaagcggaacggtagattcgctggatgaaataccgccacagaataacaacgtg
ccacctaggcaaggatttagtcatcgattaagccatgtttcaatgtttcgttcaggcttt
agtaatagtagtgtaagtataataagagctcctatgttctcttggatacatcgtagtgct
gaatttaataatataattccttcatcacaaattacacaaatacctttaacaaaatctact
aatcttggctctggaacttctgtcgttaaaggaccaggatttacaggaggagatattctt
cgaagaacttcacctggccagatttcaaccttaagagtaaatattactgcaccattatca
caaagatatcgggtaagaattcgctacgcttctaccacaaatttacaattccatacatca
attgacggaagacctattaatcaggggaatttttcagcaactatgagtagtgggagtaat
ttacagtccggaagctttaggactgtaggttttactactccgtttaacttttcaaatgga
tcaagtgtatttacgttaagtgctcatgtcttcaattcaggcaatgaagtttatatagat
cgaattgaatttgttccggcagaagtaacctttgaggcagaatatgatttagaaagagca
caaaaggcggtgaatgagctgtttacttcttccaatcaaatcgggttaaaaacagatgtg
acggattatcatattgatcaagtatccaatttagttgagtgtttatctgatgaattttgt
ctggatgaaaaaaaagaattgtccgagaaagtcaaacatgcgaagcgacttagtgatgag
cggaatttacttcaagatccaaactttagagggatcaatagacaactagaccgtggctgg
agaggaagtacggatattaccatccaaggaggcgatgacgtattcaaagagaattacgtt
acgctattgggtacctttgatgagtgctatccaacgtatttatatcaaaaaatagatgag
tcgaaattaaaagcctatacccgttaccaattaagagggtatatcgaagatagtcaagac
ttagaaatctatttaattcgctacaatgccaaacacgaaacagtaaatgtgccaggtacg
ggttccttatggccgctttcagccccaagtccaatcggaaaatgtgcccatcattcccat
catttctccttggacattgatgttggatgtacagacttaaatgaggacttaggtgtatgg
gtgatattcaagattaagacgcaagatggccatgcaagactaggaaatctagaatttctc
gaagagaaaccattagtaggagaagcactagctcgtgtgaaaagagcggagaaaaaatgg
agagacaaacgtgaaaaattggaatgggaaacaaatattgtttataaagaggcaaaagaa
tctgtagatgctttatttgtaaactctcaatatgatagattacaagcggataccaacatc
gcgatgattcatgcggcagataaacgcgttcatagcattcgagaagcttatctgcctgag
ctgtctgtgattccgggtgtcaatgcggctatttttgaagaattagaagggcgtattttc
actgcattctccctatatgatgcgagaaatgtcattaaaaatggtgattttaataatggc
ttatcctgctggaacgtgaaagggcatgtagatgtagaagaacaaaacaaccaccgttcg
gtccttgttgttccggaatgggaagcagaagtgtcacaagaagttcgtgtctgtccgggt
cgtggctatatccttcgtgtcacagcgtacaaggagggatatggagaaggttgcgtaacc
attcatgagatcgagaacaatacagacgaactgaagtttagcaactgtgtagaagaggaa
gtatatccaaacaacacggtaacgtgtaatgattatactgcgactcaagaagaatatgag
ggtacgtacacttctcgtaatcgaggatatgacggagcctatgaaagcaattcttctgta
ccagctgattatgcatcagcctatgaagaaaaagcatatacagatggacgaagagacaat
ccttgtgaatctaacagaggatatggggattacacaccactaccagctggctatgtgaca
aaagaattagagtacttcccagaaaccgataaggtatggattgagatcggagaaacggaa
ggaacattcatcgtggacagcgtggaattacttcttatggaggaataa
5' End
3' End
NotesThe CDS for the natural gene was taken from the NCBI database. No tests were conducted on any unaltered natural genes.The CDS for the recoded gene was not provided and could not be obtained.
Expression VectorpKGH4
Assay MethodsNorthern Blot, Southern Blot, ELISA
ResultsBarely detectable to significant amounts (Ranging from .01% to 3% soluble protein, with most having between .2% and 2% soluble protein)
Protein FunctionInsecticidal for rice pests
Recoding PurposeTo improve expression
Synthesized ByAuthors
Recoding MethodCodons from the natural gene were modified based on the codon usage patterns of highly expressed
rice plants. In addition, a maize ubiquitin promoter, a CaMV35S promoter, and a Bp10 promoter were
fused to the gene
Publication Author(s)Cheng, X.; Sardana, R.; Kaplan, H.; Altosaar, I.
Corresponding AuthorIllimar Altosaar
Corresponding AddressAgricultural Biotechnology Laboratories, Department of Biochemistry, Faculty of Medicine, University of Ottawa, 40 Marie Curie Private, Ottawa, Ontario, K1N 6N5 Canada.
Publication Year1998
Publication TitleAgrobacterium-transformed rice plants expressing synthetic cryIA(b) and cryIA(c) genes are highly toxic to striped stem borer and yellow stem borer
AbstractOver 2,600 transgenic rice plants in nine strains were regenerated from >500 independently selected hygromycin-resistant calli after Agrobacterium-mediated transformation. The plants were transformed with fully modified (plant codon optimized) versions of two synthetic cryIA(b) and cryIA(c) coding sequences from Bacillus thuringiensis as well as the hph and gus genes, coding for hygromycin phosphotransferase and beta-glucuronidase, respectively. These sequences were placed under control of the maize ubiquitin promoter, the CaMV35S promoter, and the Brassica Bp10 gene promoter to achieve high and tissue-specific expression of the lepidopteran-specific delta-endotoxins. The integration, expression, and inheritance of these genes were demonstrated in R0 and R1 generations by Southern, Northern, and Western analyses and by other techniques. Accumulation of high levels (up to 3% of soluble proteins) of CryIA(b) and CryIA(c) proteins was detected in R0 plants. Bioassays with R1 transgenic plants indicated that the transgenic plants were highly toxic to two major rice insect pests, striped stem borer (Chilo suppressalis) and yellow stem borer (Scirpophaga incertulas), with mortalities of 97-100% within 5 days after infestation, thus offering a potential for effective insect resistance in transgenic rice plants.
JournalProc Natl Acad Sci U S A. 95(6): 2767-72.
SummaryRice (Oryza sativa) was transformed with Ubi-cryIA(b) and Ubi-cryIA(c), recoded versions of the cryIA(b) and cryIA(c) genes respectively, in order to increase the expression of protein in rice plants. Both natural genes were codon optimized based on the codon usage patterns of rice platns in order to attain the recoded genes, Ubi-cryIA(b) and Ubi-cryIA(c). As expected, Ubi-cryIA(b) and Ubi-cryIA(c) plants were able to produce barely detectable to significant amounts of their respective proteins. Overall, the recoding can be considered fairly successful, since it was able to create a higher yield of protein, but not in all plants.
CommentsThe CDS for the recoded gene and natural gene was not provided. The CDS for the natural gene was taken from the NCBI database and the recoded gene CDS could not be obtained. No tests were conducted on any unaltered natural genes.
Discussion http://www.evolvingcode.net/forum/viewtopic.php?t=567
PubMed ID9501164
Submitter NameQureshi, Imran
Submitter Address1000 Hilltop Circle Baltimore, MD 21250 USA
Entry ConfirmationNo
 
 

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