hpcf2009.bib

@techreport{SharmaGobbertTR2009,
  author = {Neeraj Sharma and Matthias~K. Gobbert},
  title = {Performance Studies for Multithreading in {M}atlab
           with Usage Instructions on hpc},
  number = {HPCF--2009--1},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  abstract = {Neeraj's Matlab simulations on hpc with usage instructions},
  url = {http://userpages.umbc.edu/~gobbert/papers/SharmaGobbertTR2009.pdf},
  note = {(HPCF machines used: hpc.)}
}
@techreport{GassmanGobbertTRMatlab2009,
  author = {Amanda~K. Gassman and Matthias~K. Gobbert},
  title = {Solving a Two-Dimensional Elliptic Model Problem
           with the Conjugate Gradient Method Using
           Matrix-Free {SSOR} Preconditioning in {Matlab}},
  number = {HPCF--2009--2},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  abstract = {Amanda's Matlab results for matrix-free SSOR preconditioning},
  url = {http://userpages.umbc.edu/~gobbert/papers/GassmanGobbertTRMatlab2009.pdf},
  note = {(HPCF machines used: hpc.)}
}
@techreport{Interface1DTR2009,
  author = {Guan Wang and Aaron Churchill and
            Matthias~K. Gobbert and Thomas~I. Seidman},
  title = {Efficient Computation for a Reaction-Diffusion System
           with a Fast Reaction with Continuous and Discontinuous Initial Data
           Using {COMSOL} {M}ultiphysics},
  number = {HPCF--2009--3},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  abstract = {Guan's 1-D results for three species and two component model},
  url = {http://userpages.umbc.edu/~gobbert/papers/Interface1DTR2009.pdf},
  note = {(HPCF machines used: hpc.)}
}
@techreport{PetraGobbertTR2009,
  author = {Noemi Petra and Matthias~K. Gobbert},
  title = {Performance Studies with {COMSOL} {M}ultiphysics
           via Scripting and Batch Processing},
  number = {HPCF--2009--4},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  abstract = {Noemi's COMSOL simulations on hpc with usage instructions},
  url = {http://userpages.umbc.edu/~gobbert/papers/PetraGobbertTR2009.pdf},
  note = {(HPCF machines used: hpc.)},
  webnotes = {Files for download with this report: \href{http://userpages.umbc.edu/~gobbert/papers/poisson2d.m}{poisson2d.m}, 
	\href{http://userpages.umbc.edu/~gobbert/papers/poisson2d_graphics.m}{poisson2d_graphics.m}, 
	\href{http://userpages.umbc.edu/~gobbert/papers/poisson2d_matlab.m}{poisson2d_matlab.m}, 
	\href{http://userpages.umbc.edu/~gobbert/papers/poisson2d_infile.mph}{poisson2d_infile.mph}, 
	\href{http://userpages.umbc.edu/~gobbert/papers/qsub-COMSOL_with_MATLAB}{qsub-COMSOL_with_MATLAB}, 
	\href{http://userpages.umbc.edu/~gobbert/papers/qsub-COMSOL}{qsub-COMSOL}}
}
@techreport{WangGobbertTR2009,
  author = {Guan Wang and Matthias~K. Gobbert},
  title = {Performance Comparison between Blocking and Non-Blocking
           Communications for a Three-Dimensional {P}oisson Problem},
  number = {HPCF--2009--5},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  abstract = {Guan's Math 627 report on hpc comparing Ssend and Isend},
  note = {(HPCF machines used: hpc.)},
  url = {http://userpages.umbc.edu/~gobbert/papers/WangGobbertTR2009.pdf}
}
@techreport{SigmaPumpTR2009,
  author = {Zana Coulibaly and Michael Muscedere and
            Matthias~K. Gobbert and Bradford~E. Peercy},
  title = {Long-Time Simulation of Calcium Waves in a Heart Cell to
           Study the Effects of Calcium Release Flux Density and of
           Coefficients in the Pump and Leak Mechanisms on
           Self-Organizing Wave Behavior},
  number = {HPCF--2009--6},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  abstract = {Zana's Math 627 and Michael's Math 699 reports},
  note = {(HPCF machines used: hpc.)},
  url = {http://userpages.umbc.edu/~gobbert/papers/SigmaPumpTR2009.pdf}
}
@techreport{Interface2DTR2009,
  author = {Aaron Churchill and Matthias~K. Gobbert and Thomas~I. Seidman},
  title = {Efficient Computation for a Reaction-Diffusion System
           with a Fast Reaction in Two Spatial Dimensions
           using {COMSOL} {M}ultiphysics},
  number = {HPCF--2009--7},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  abstract = {Aaron's 2-D results for three species and two component model},
  note = {(HPCF machines used: hpc.)},
  url = {http://userpages.umbc.edu/~gobbert/papers/Interface2DTR2009.pdf}
}
@techreport{RaimGobbertTR2009,
  author = {Andrew~M. Raim and Matthias~K. Gobbert},
  title = {Parallel Performance Studies for a
           Maximum Likelihood Estimation Problem Using {TAO}},
  number = {HPCF--2009--8},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  note = {(HPCF machines used: hpc.)},
  url = {http://userpages.umbc.edu/~gobbert/papers/RaimGobbertTR2009.pdf}
}
@techreport{SzatmaryEggletonTR2009,
  author = {A. Szatmary and C.~D. Eggleton},
  title = {Modeling Fluid-Structure Interactions in Non-Periodic Viscous
           Flow with the Immersed Boundary 
           Method and {C}horin's Projection Method in {F}ourier Space},
  number = {HPCF--2009--9},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  note = {(HPCF machines used: hpc.)}
}
@article{SergioEtAlJGR2009,
  author = {S.~G. DeSouza-Machado and L.~L. Strow and B. Imbiriba and
            K. McCann and R.~M. Hoff and S.~E. Hannon and J.~V. Martins and
            D. Tanr\'{e} and J.~L. Deuz\'{e} and F. Ducos and O. Torres},
  title = {Infrared retrievals of dust using {AIRS}: Comparisons of optical
           depths and heights derived for a {North African} dust storm to 
           other collocated {EOS A-Train} and surface observations},
  year = 2010,
  journal = {Journal of Geophysical Research (Atmospheres)},
  volume = 115,
  note = {(HPCF machines used: hpc.)}
}
@article{ReidUMBCReview2010,
  author = {Michael J. Reid},
  title = {Parallel Performance Studies for a Numerical Simulator
           of Atomic Layer Deposition},
  journal = {UMBC Review: Journal of Undergraduate Research},
  year = 2010,
  volume = 11,
  pages = {30--41},
  url = {http://userpages.umbc.edu/~gobbert/papers/ReidUMBCReview2010.pdf},
  note = {(HPCF machines used: hpc.) Pre-print PDF is given here.}
}
@techreport{YangTR2009,
  author = {Yushu Yang},
  title = {Parallel Studies for Chemically Reacting Systems},
  number = {HPCF--2009--12},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2009,
  url = {http://userpages.umbc.edu/~gobbert/papers/627project-report-Yushu.pdf},
  note = {(HPCF machines used: hpc.)}
}
@inproceedings{PetraGobbertCOMSOL2009,
  author = {Noemi Petra and Matthias~K. Gobbert},
  title = {Parallel Performance Studies for {COMSOL} {M}ultiphysics
           Using Scripting and Batch Processing},
  editor = {Yeswanth Rao},
  booktitle = {Proceedings of the {COMSOL} Conference 2009, Boston, MA},
  url = {http://userpages.umbc.edu/~gobbert/papers/PetraGobbertCOMSOL2009.pdf},
  year = 2009,
  note = {(HPCF machines used: hpc.)}
}
@inproceedings{GobbertEtAlCOMSOL2009,
  author = {Matthias~K. Gobbert and Aaron Churchill and Guan Wang and
            Thomas~I. Seidman},
  title = {{COMSOL} {M}ultiphysics for Efficient Solution
           of a Transient Reaction-Diffusion System with Fast Reaction},
  editor = {Yeswanth Rao},
  booktitle = {Proceedings of the {COMSOL} Conference 2009, Boston, MA},
  url = {http://userpages.umbc.edu/~gobbert/papers/GobbertEtAlCOMSOL2009.pdf},
  year = 2009,
  note = {(HPCF machines used: hpc.)}
}
@inproceedings{BhaskarWeltyMaxwell2009,
  author = {Bhaskar, A. and C. Welty and R. Maxwell},
  year = 2009,
  title = {Urban Watershed Modeling Across Landscape Scales},
  booktitle = {American Geophysical Union, Fall Meeting},
  note = {(HPCF machines used: hpc.)}
}
@inproceedings{ElliottEtAl2009,
  author = {D.~A. Elliott and H.~H. Aumann and L.~L. Strow and S.~E. Hannon},
  title = {Two-year comparison of radiances from the Atmospheric Infrared
           Sounder ({AIRS}) and the Infrared Atmospheric Sounding
           Interferometer ({IASI})},
  booktitle = {Society of Photo-Optical Instrumentation Engineers (SPIE)
               Conference Series},
  volume = 7456,
  year = 2009,
  note = {(HPCF machines used: hpc.)}
}
@inproceedings{ManningEtAl2009,
  author = {E.~M. Manning and H.~H. Aumann and R.~G. Deen and Y. Jiang and
            L.~L. Strow and S.~E. Hannon},
  title = {Spectral calibration in hyperspectral sounders},
  booktitle = {Society of Photo-Optical Instrumentation Engineers (SPIE)
               Conference Series},
  volume = 7452,
  year = 2009,
  note = {(HPCF machines used: hpc.)}
}
@article{ShenFrey2009,
  author = {H. Shen and D. D. Frey},
  title = {Serial displacement chromatofocusing and its applications in
           {2D-PAGE} and {2D-HPLC}. Part 1: Theory and general considerations},
  journal = {J. Chromatogr.\ A},
  volume = 1216,
  pages = {977--986},
  year = 2009
}