@techreport{WangEtAlGPGPU2012, author = {Yu Wang and Marc Olano and Matthias K. Gobbert and Wesley Griffin}, title = {A {GPU} Memory System Comparison for an Elliptic Test Problem}, number = {HPCF--2012--1}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/WangEtAlHPCF2012.pdf}, note = {(HPCF machines used: tara.)} }

@misc{KollonigeEtAl2011, author = {D. Wicks Kollonige and L.~C. Sparling and P. Sawamura and B. Baker and S.~G. Trahan}, title = {A case study of complex stratospheric influence on {U.S.} surface air quality in {F}ebruary 2010}, journal = {Atmospheric Chemistry and Physics Discussions}, note = {Submitted. (HPCF machines used: tara.)}, year = 2012 }

@misc{GuptaNeevesEggleton2012, author = {V.~K. Gupta K.~B. Neeves and C.~D. Eggleton}, title = {Single-molecule dynamic force spectroscopy on live cells}, note = {Submitted. (HPCF machines used: tara.)}, year = 2012 }

@misc{GuptaEggleton2012, author = {V.~K. Gupta and C.~D. Eggleton}, title = {A Theoretical Method to determine unstressed o-rate from multiple bond rupture force spectroscopy}, note = {Submitted. (HPCF machines used: tara.)}, year = 2012 }

@article{BrewsterSIURO2012, author = {Matthew~W. Brewster}, title = {Study of Free Alternative Numerical Computation Packages}, journal = {SIAM Undergraduate Research Online (SIURO)}, volume = 5, year = 2012, preprint = {http://userpages.umbc.edu/~gobbert/papers/BrewsterSIURO2012.pdf}, url = {https://www.siam.org/students/siuro/vol5/S01178.pdf}, note = {(HPCF machines used: tara.)} }

@techreport{SchaferHPCF2012, author = {Jonas Sch\"{a}fer}, title = {Performance Studies for the Two-Dimensional {P}oisson Problem Discretized by Finite Differences}, number = {HPCF--2012--6}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/SchaferHPCF20126.pdf}, note = {(HPCF machines used: tara.)} }

@techreport{PopuriHPCF2012, author = {Sai~K. Popuri and Andrew~M. Raim and Matthew~W. Brewster and Matthias~K. Gobbert}, title = {A Comparative Evaluation of {M}atlab, {O}ctave, {F}ree{M}at, {S}cilab, and {R} on Tara}, number = {HPCF--2012--7}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/PopuriHPCF2012.pdf}, note = {(HPCF machines used: tara.)} }

@misc{McKissackThesis2012, author = {Randal McKissack}, title = {Cluster Computing using {I}ntel {C}oncurrent {C}ollections}, howpublished = {Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/MckissackThesis2012.pdf}, note = {(HPCF machines used: tara.)} }

@misc{ForderThesis2012, author = {Robert Forder}, title = {Simulating the evolution of transcriptional regulatory motifs}, howpublished = {Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/ForderThesis2012.pdf}, note = {(HPCF machines used: tara.)} }

@misc{ComanThesis2012, author = {Ecaterina Coman}, title = {{IDL}: A Possible Alternative to {M}atlab?}, howpublished = {Senior Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/ComanThesis2012.pdf}, note = {(HPCF machines used: tara.)} }

@techreport{REU2012Team1, author = {Jordan~B. Angel and Amy~M. Flores and Justine~S. Heritage and Nathan~C. Wardrip and Andrew~M. Raim and Matthias~K. Gobbert and Richard~C. Murphy and David~J. Mountain}, title = {Graph 500 Performance on a Distributed-Memory Cluster}, number = {HPCF--2012--11}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2012Team1.pdf}, url = {http://www.umbc.edu/hpcreu/2012/projects/team1.html}, note = {(HPCF machines used: tara.)} }

@techreport{REU2012Team2, author = {Rosemary~K. Le and Christopher~V. Rackauckas and Anne~S. Ross and Nehemias Ulloa and Sai~K. Popuri and Nagaraj~K. Neerchal and Brian~R. Smith}, title = {Water Quality Monitoring of {M}aryland's Tidal Waterways}, number = {HPCF--2012--12}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2012Team2.pdf}, url = {http://www.umbc.edu/hpcreu/2012/projects/team2.html}, note = {In Progress. (HPCF machines used: tara.)} }

@techreport{REU2012Team3, author = {Annie Castner and Jenny Louthan and Edwardo Rivera and Christian Weigandt and Jonathan~S. McHenry and Nagaraj~K. Neerchal and Matthias~K. Gobbert and Michael Dillon}, title = {Simulation of a University as a Dynamical System}, number = {HPCF--2012--13}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2012Team3.pdf}, url = {http://www.umbc.edu/hpcreu/2012/projects/team3.html}, note = {In Progress. (HPCF machines used: tara.)} }

@techreport{RaimLiuNeerchalMorel2012, author = {Andrew~M. Raim and Minglei Liu and Nagaraj~K. Neerchal and Jorge~G. Morel}, title = {An {A}pproximate {F}isher {S}coring {A}lgorithm for Finite Mixtures of Multinomials}, number = {HPCF--2012--14}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/RaimLiuNeerchalMorel2012.pdf}, note = {(HPCF machines used: tara.)} }

@techreport{ComanHPCF2012, author = {Ecaterina Coman and Matthew~W. Brewster and Sai~K. Popuri and Andrew~M. Raim and Matthias~K. Gobbert}, title = {A Comparative Evaluation of {M}atlab, {O}ctave, {F}ree{M}at, {S}cilab, {R}, and {IDL} on tara}, number = {HPCF--2012--15}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2012, pdf = {http://userpages.umbc.edu/~gobbert/papers/ComanHPCF2012.pdf}, webnotes = {Files for download with this report: \href{http://userpages.umbc.edu/~gobbert/papers/ComanHPCF2012/}{ComanHPCF2012/} }, note = {(HPCF machines used: tara.)} }

@article{WangEtAlHPCF2012, author = {Yu Wang and Marc Olano and Matthias~K. Gobbert and Wesley Griffin}, title = {Parallel Computing for Long-Time Simulations of Calcium Waves in a Heart Cell}, journal = {Proc.\ Appl.\ Math.\ Mech. (PAMM)}, volume = 12, number = 1, url = {http://dx.doi.org/10.1002/pamm.201210307}, pages = {637--638}, year = 2012, reprint = {http://userpages.umbc.edu/~gobbert/papers/WangEtAlGAMM2012.pdf}, note = {(HPCF machines used: tara.)}, abstract = {GAMM Tagung Darmstadt 2012} }

@unpublished{ChurchillWangGobbertSeidman2009, author = {Aaron Churchill and Guan Wang and Matthias~K. Gobbert and Thomas~I. Seidman}, title = {Efficient Simulation of a Reaction-Diffusion System with a Fast Reaction in the Asymptotic Limit}, year = {submitted, 2012}, pdf = {http://userpages.umbc.edu/~gobbert/papers/InterfaceMMAS2012.pdf}, note = {(HPCF machines used: tara.)} }

@article{REU2012TEAM2SIURO2012, author = {Rosemary~K. Le and Christopher~V. Rackauckas and Anne~S. Ross and Nehemias Ulloa}, title = {Assessment of Statistical Methods for Water Quality Monitoring in {M}aryland's Tidal Waterways}, journal = {SIAM Undergraduate Research Online (SIURO)}, volume = 6, year = 2013, preprint = {http://userpages.umbc.edu/~gobbert/papers/REU2012Team2SIURO2013.pdf}, url = {http://www.siam.org/students/siuro/vol6/S01207.pdf}, note = {(HPCF machines used: tara.)} }

@article{BrewsterUMBCReview2012, author = {Matthew Brewster}, title = {Alternatives to the Mathematical Software Package {MATLAB} in Research and Education}, journal = {{UMBC} {R}eview: Journal of Undergraduate Research}, volume = 14, pages = {50--65}, year = 2013, note = {(HPCF machines used: tara.)} }

@article{Graph500ParallelComput, author = {Jordan~B. Angel and Amy~M. Flores and Justine~S. Heritage and Nathan~C. Wardrip and Andrew~M. Raim and Matthias~K. Gobbert and Richard~C. Murphy and David~J. Mountain}, title = {The {G}raph 500 Benchmark on a Medium-Size Distributed-Memory Cluster with High-Performance Interconnect}, year = 2012, note = {Submitted. (HPCF machines used: tara.)}, pdf = {http://userpages.umbc.edu/~gobbert/papers/Graph500ParallelComput.pdf} }

@misc{SzatmaryThesis2012, author = {Alex~C. Szatmary}, title = {\emph{Deformation and motion of cells and biological capsules in fluid flow, investigated with numerical methods}}, howpublished = {Ph.D. Thesis, Department of Mechanical Engineering, University of Maryland, Baltimore County}, year = 2012, note = {(HPCF machines used: tara.)} }