hpcf2012.bib

@techreport{WangEtAlGPGPU2012,
  author = {Yu Wang and Marc Olano and Matthias K. Gobbert and Wesley Griffin},
  title = {A {GPU} Memory System Comparison for an Elliptic Test Problem},
  number = {HPCF--2012--1},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/WangEtAlHPCF2012.pdf},
  note = {(HPCF machines used: tara.)}
}
@misc{KollonigeEtAl2011,
  author = {D. Wicks Kollonige and L.~C. Sparling and
            P. Sawamura and B. Baker and S.~G. Trahan},
  title = {A case study of complex stratospheric influence on {U.S.}
           surface air quality in {F}ebruary 2010},
  journal = {Atmospheric Chemistry and Physics Discussions},
  note = {Submitted. (HPCF machines used: tara.)},
  year = 2012
}
@misc{GuptaNeevesEggleton2012,
  author = {V.~K. Gupta K.~B. Neeves and C.~D. Eggleton},
  title = {Single-molecule dynamic force spectroscopy on live cells},
  note = {Submitted. (HPCF machines used: tara.)},
  year = 2012
}
@misc{GuptaEggleton2012,
  author = {V.~K. Gupta and C.~D. Eggleton},
  title = {A Theoretical Method to determine unstressed o-rate from multiple
           bond rupture force spectroscopy},
  note = {Submitted. (HPCF machines used: tara.)},
  year = 2012
}
@article{BrewsterSIURO2012,
  author = {Matthew~W. Brewster},
  title = {Study of Free Alternative Numerical Computation Packages},
  journal = {SIAM Undergraduate Research Online (SIURO)},
  volume = 5,
  year = 2012,
  preprint = {http://userpages.umbc.edu/~gobbert/papers/BrewsterSIURO2012.pdf},
  url = {https://www.siam.org/students/siuro/vol5/S01178.pdf},
  note = {(HPCF machines used: tara.)}
}
@techreport{SchaferHPCF2012,
  author = {Jonas Sch\"{a}fer},
  title = {Performance Studies for the Two-Dimensional {P}oisson
           Problem Discretized by Finite Differences},
  number = {HPCF--2012--6},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/SchaferHPCF20126.pdf},
  note = {(HPCF machines used: tara.)}
}
@techreport{PopuriHPCF2012,
  author = {Sai~K. Popuri and Andrew~M. Raim and
            Matthew~W. Brewster and Matthias~K. Gobbert},
  title = {A Comparative Evaluation of {M}atlab, {O}ctave,
           {F}ree{M}at, {S}cilab, and {R} on Tara},
  number = {HPCF--2012--7},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/PopuriHPCF2012.pdf},
  note = {(HPCF machines used: tara.)}
}
@misc{McKissackThesis2012,
  author = {Randal McKissack},
  title = {Cluster Computing using {I}ntel {C}oncurrent {C}ollections},
  howpublished = {Senior Thesis, Department of Mathematics and Statistics,
                  University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/MckissackThesis2012.pdf},
  note = {(HPCF machines used: tara.)}
}
@misc{ForderThesis2012,
  author = {Robert Forder},
  title = {Simulating the evolution of transcriptional regulatory motifs},
  howpublished = {Senior Thesis, Department of Mathematics and Statistics,
                  University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/ForderThesis2012.pdf},
  note = {(HPCF machines used: tara.)}
}
@misc{ComanThesis2012,
  author = {Ecaterina Coman},
  title = {{IDL}: A Possible Alternative to {M}atlab?},
  howpublished = {Senior Thesis, Department of Mathematics and Statistics,
                  University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/ComanThesis2012.pdf},
  note = {(HPCF machines used: tara.)}
}
@techreport{REU2012Team1,
  author = {Jordan~B. Angel and Amy~M. Flores and Justine~S. Heritage and
            Nathan~C. Wardrip and Andrew~M. Raim and Matthias~K. Gobbert
            and Richard~C. Murphy and David~J. Mountain},
  title = {Graph 500 Performance on a Distributed-Memory Cluster},
  number = {HPCF--2012--11},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2012Team1.pdf},
  url = {http://www.umbc.edu/hpcreu/2012/projects/team1.html},
  note = {(HPCF machines used: tara.)}
}
@techreport{REU2012Team2,
  author = {Rosemary~K. Le and Christopher~V. Rackauckas and
            Anne~S. Ross and Nehemias Ulloa and Sai~K. Popuri
            and Nagaraj~K. Neerchal and Brian~R. Smith},
  title = {Water Quality Monitoring of {M}aryland's Tidal Waterways},
  number = {HPCF--2012--12},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2012Team2.pdf},
  url = {http://www.umbc.edu/hpcreu/2012/projects/team2.html},
  note = {In Progress. (HPCF machines used: tara.)}
}
@techreport{REU2012Team3,
  author = {Annie Castner and Jenny Louthan and Edwardo Rivera
            and Christian Weigandt and Jonathan~S. McHenry and
            Nagaraj~K. Neerchal and Matthias~K. Gobbert and
            Michael Dillon},
  title = {Simulation of a University as a Dynamical System},
  number = {HPCF--2012--13},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2012Team3.pdf},
  url = {http://www.umbc.edu/hpcreu/2012/projects/team3.html},
  note = {In Progress. (HPCF machines used: tara.)}
}
@techreport{RaimLiuNeerchalMorel2012,
  author = {Andrew~M. Raim and Minglei Liu and Nagaraj~K. Neerchal
            and Jorge~G. Morel},
  title = {An {A}pproximate {F}isher {S}coring {A}lgorithm for Finite Mixtures
           of Multinomials},
  number = {HPCF--2012--14},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/RaimLiuNeerchalMorel2012.pdf},
  note = {(HPCF machines used: tara.)}
}
@techreport{ComanHPCF2012,
  author = {Ecaterina Coman and Matthew~W. Brewster and
            Sai~K. Popuri and Andrew~M. Raim and Matthias~K. Gobbert},
  title = {A Comparative Evaluation of {M}atlab, {O}ctave, {F}ree{M}at,
           {S}cilab, {R}, and {IDL} on tara},
  number = {HPCF--2012--15},
  institution = {UMBC High Performance Computing Facility,
                 University of Maryland, Baltimore County},
  year = 2012,
  pdf = {http://userpages.umbc.edu/~gobbert/papers/ComanHPCF2012.pdf},
  webnotes = {Files for download with this report:
    \href{http://userpages.umbc.edu/~gobbert/papers/ComanHPCF2012/}{ComanHPCF2012/}
  },
  note = {(HPCF machines used: tara.)}
}
@article{WangEtAlHPCF2012,
  author = {Yu Wang and Marc Olano and Matthias~K. Gobbert and Wesley Griffin},
  title = {Parallel Computing for Long-Time Simulations of Calcium Waves
           in a Heart Cell},
  journal = {PAMM Proc.\ Appl.\ Math.\ Mech.},
  volume = 12,
  number = 1,
  url = {http://dx.doi.org/10.1002/pamm.201210307},
  pages = {637--638},
  year = 2012,
  reprint = {http://userpages.umbc.edu/~gobbert/papers/WangEtAlGAMM2012.pdf},
  note = {(HPCF machines used: tara.)},
  abstract = {GAMM Tagung Darmstadt 2012}
}
@unpublished{ChurchillWangGobbertSeidman2009,
  author = {Aaron Churchill and Guan Wang and
            Matthias~K. Gobbert and Thomas~I. Seidman},
  title = {Efficient Simulation of a Reaction-Diffusion System
           with a Fast Reaction in the Asymptotic Limit},
  year = {submitted, 2012},
  pdf = {http://userpages.umbc.edu/~gobbert/papers/InterfaceMMAS2012.pdf},
  note = {(HPCF machines used: tara.)}
}
@article{REU2012TEAM2SIURO2012,
  author = {Rosemary~K. Le and Christopher~V. Rackauckas and Anne~S. Ross
            and Nehemias Ulloa},
  title = {Assessment of Statistical Methods for Water Quality Monitoring
           in {M}aryland's Tidal Waterways},
  journal = {SIAM Undergraduate Research Online (SIURO)},
  volume = 6,
  year = 2013,
  preprint = {http://userpages.umbc.edu/~gobbert/papers/REU2012Team2SIURO2013.pdf},
  url = {http://www.siam.org/students/siuro/vol6/S01207.pdf},
  note = {(HPCF machines used: tara.)}
}
@article{BrewsterUMBCReview2012,
  author = {Matthew Brewster},
  title = {Alternatives to the Mathematical Software Package {MATLAB}
           in Research and Education},
  journal = {{UMBC} {R}eview: Journal of Undergraduate Research},
  volume = 14,
  pages = {50--65},
  year = 2013,
  note = {(HPCF machines used: tara.)}
}
@article{Graph500ParallelComput,
  author = {Jordan~B. Angel and Amy~M. Flores and Justine~S. Heritage and
            Nathan~C. Wardrip and Andrew~M. Raim and Matthias~K. Gobbert
            and Richard~C. Murphy and David~J. Mountain},
  title = {The {G}raph 500 Benchmark on a Medium-Size Distributed-Memory
			Cluster with High-Performance Interconnect},
  year = 2012,
  note = {Submitted. (HPCF machines used: tara.)},
  pdf = {http://userpages.umbc.edu/~gobbert/papers/Graph500ParallelComput.pdf}
}
@misc{SzatmaryThesis2012,
  author = {Alex~C. Szatmary},
  title = {\emph{Deformation and motion of cells and biological
           capsules in fluid flow, investigated with numerical methods}},
  howpublished = {Ph.D. Thesis, Department of Mechanical Engineering,
                  University of Maryland, Baltimore County},
  year = 2012,
  note = {(HPCF machines used: tara.)}
}