@article{CornishEtAl2014, author = {Cornish, Joseph P. and Sanchez-Alberola, Neus and ONeill, Patrick K. and O'Keefe, Ronald and Gheba, Jameel and Erill, Ivan}, title = {Characterization of the {SOS} meta-regulon in the human gut microbiome}, year = 2014, journal = {Bioinformatics}, url = {http://bioinformatics.oxfordjournals.org/content/early/2014/01/21/bioinformatics.btt753.abstract}, note = {(HPCF machines used: tara.)} }

@techreport{StonkoStarzGaianoPeercy2014, author = {David Stonko and Michelle Starz-Gaiano and Bradford~E. Peercy}, title = {Implementing a Numerical Package to Model Collective Cell Migration}, number = {HPCF--2014--2}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/Stonko_Technical_Report.pdf}, note = {(HPCF machines used: tara.)} }

@misc{RaimThesis2014, author = {Andrew~M. Raim}, title = {\emph{Computational Methods in Finite Mixtures using Approximate Information and Regression Linked to the Mixture Mean}}, howpublished = {Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County}, year = 2014, note = {(HPCF machines used: tara.)} }

@article{PanUMBCReview2013, author = {Jane Pan and Gemma Gearhart and Shuai Jiang and Thomas~J. May}, title = {Loss of Metabolic Oscillations in a Multicellular Computational Islet of the Pancreas}, journal = {UMBC Review: Journal of Undergraduate Research}, volume = 15, pages = {31--53}, year = 2014, note = {(HPCF machines used: tara.)} }

@article{Islet_LiB2014, author = {Gemma Gearhart and Shuai Jiang and Thomas~J. May and Jane Pan and Samuel Khuvis and Matthias~K. Gobbert and Bradford~E. Peercy and Arthur Sherman}, title = {Dynamics of Computational Islet Simulations: Islets with Majority Mutated Open $\mathrm{K_{ATP}}$ Channels Retain Bursting}, journal = {Letters in Biomathematics}, note = {[Invited paper for the inaugural issue of this journal, published originally in the Proceedings of the Sixth Symposium on BEER 2013] (HPCF machines used: tara.)}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/Islet_LiB2014.pdf} }

@techreport{PoissonHPCF2014, author = {Samuel Khuvis and Matthias~K. Gobbert}, title = {Parallel Performance Studies for an Elliptic Test Problem on maya 2013}, number = {HPCF--2014--6}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/PoissonHPCF2014.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{ParabolicHPCF2014, author = {Jonathan Graf and Matthias~K. Gobbert}, title = {Parallel Performance Studies for a Parabolic Test Problem on maya 2013}, number = {HPCF--2014--7}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/ParabolicHPCF2014.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{CalciumHPCF2014, author = {Xuan Huang and Matthias~K. Gobbert}, title = {Parallel Performance Studies for a Three-Species Application Problem on maya 2013}, number = {HPCF--2014--8}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/CalciumHPCF2014.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{StonkoKhuvisGobbertHPCF2014, author = {David Stonko and Samuel Khuvis and Matthias~K. Gobbert}, title = {Numerical Methods to Solve 2-D and 3-D Elliptic Partial Differential Equations Using {M}atlab on the Cluster maya}, number = {HPCF--2014--9}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/StonkoEtAl_HPCF2014.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{SawtskiKhuvisGobbertHPCF2014, author = {Sarah Swatski and Samuel Khuvis and Matthias~K. Gobbert}, title = {A Comparison of Solving the Poisson Equation Using Several Numerical Methods in {M}atlab and {O}ctave on the Cluster maya}, number = {HPCF--2014--10}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/SwatskiEtAl_HPCF2014.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{REU2014Team1, author = {Nancy Hong and Emily Jasien and Christopher Pagan and Daniel Xie and Zana Coulibaly and Kofi~P. Adragni and Ian~F. Thorpe}, title = {Nonlinear Measurers of Correlation and Dimensionality Reduction with Application to Protein Motion}, number = {HPCF--2014--11}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team1.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{REU2014Team2, author = {Christopher Evans and Abigail Gartrell and Lauren Gomez and Moise Mouyebe and Darius Oxley and Sai Kumar Popuri and Nagaraj~K. Neerchal and Amita Mehta}, title = {Improving the Computational Efficiency of Downscaling {GCM} Data for Use in {SWAT}}, number = {HPCF--2014--12}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team2.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{REU2014Team3, author = {Annie Dai and David Palensky and Alex Piatski and Kendall Queen and Gina Vockeroth and Teresa Lebair and Bradford~E. Peercy and Margaret Watts and Arthur Sherman}, title = {Modeling the Building Blocks of the Pancreatic Islet: Connecting Alpha, Beta, and Delta Cells}, number = {HPCF--2014--13}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team3.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{REU2014Team4, author = {Adam Cunningham and Gerald Payton and Jack Slettebak and Jordi Wolfson-Pou and Jonathan Graf and Xuan Huang and Samuel Khuvis and Matthias~K. Gobbert and Thomas Salter and David~J. Mountain}, title = {Pushing the Limits of the Maya Cluster}, number = {HPCF--2014--14}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team4.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{REU2014Team5, author = {Oluwapelumi Adenikinju and Julian Gilyard and Joshua Massey and Thomas Stitt and Jonathan Graf and Xuan Huang and Samuel Khuvis and Matthias~K. Gobbert and Yu Wang and Marc Olano}, title = {Real Time Global Illumination Solutions to the Radiosity Algorithm using Hybrid {CPU}/{GPU} Nodes}, number = {HPCF--2014--15}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/REU2014Team5.pdf}, note = {(HPCF machines used: maya.)} }

@misc{Stonko_Masters_Thesis, author = {David~P. Stonko}, title = {A Discrete, Three-Dimensional, Force-Based Mathematical Model of Collective Cell Migration}, howpublished = {M.S.~Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County}, year = {2014}, pdf = {http://userpages.umbc.edu/~gobbert/papers/Stonko_Masters_Thesis.pdf}, note = {(HPCF machines used: tara.)} }

@article{Weiblen_OptExpress2014, author = {R. J. Weiblen and A. Docherty and C. R. Menyuk and L. B. Shaw and J. S. Sanghera and I. D. Aggarwal}, journal = {Opt. Express}, number = {18}, pages = {22220--22231}, publisher = {OSA}, title = {Calculation of the expected output spectrum for a mid-infrared supercontinuum source based on {A}s{2S3} chalcogenide photonic crystal fibers}, volume = {22}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/Weiblen_OptExpress2014.pdf}, url = {http://www.opticsexpress.org/abstract.cfm?URI=oe-22-18-22220}, note = {(HPCF machines used: tara.)} }

@article{Hu_JLightwareTech_2014, author = {Hu, Y. and Marks, B.S. and Menyuk, C.R. and Urick, V.J. and Williams, K.J.}, journal = {Journal of Lightwave Technology}, title = {Modeling Sources of Nonlinearity in a Simple p-i-n Photodetector}, year = {2014}, volume = {32}, number = {20}, pages = {3710-3720}, issn = {0733-8724}, pdf = {http://userpages.umbc.edu/~gobbert/papers/Hu_JLightwareTech_2014.pdf}, note = {(HPCF machines used: tara.)} }

@misc{BrewsterThesis2014, author = {Matthew~W. Brewster}, title = {The Influence of Stochastic Parameters on Calcium Waves in a Heart Cell}, howpublished = {Senior thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/BrewsterThesis2014.pdf}, note = {(HPCF machines used: tara.)} }

@article{ONeill_EtAl_2014, author = {O'Neill, P.K. and Forder, R. and Erill, I.}, journal = {Journal of Computational Biology}, title = {Informational requirements for transcriptional regulation}, year = {2014}, volume = {21}, number = {5}, pages = {373-384}, temppdf = {http://userpages.umbc.edu/~gobbert/papers/ONeill_EtAl_2014.pdf}, note = {(HPCF machines used: tara.)} }

@misc{Wallbaum_GAMM2014, author = {Matthias~K. Gobbert and Andreas Meister and Sven Wallbaum}, title = {On Unconditionally Positivity Preserving and Conservative Methods for Systems of Advection-Diffusion-Reaction Equations}, note = {\emph{Proc.\ Appl.\ Math.\ Mech. (PAMM)}, submitted} }

@article{Cui_EtAl_2014, author = {Cui, Z. and Welty, C. and Maxwell, R.M.}, journal = {Computers and Geosciences}, title = {Modeling Nitrogen Transport and Transformation in Aquifers Using a Particle-Tracking Approach}, year = {2014}, volume = {70}, pages = {1-14}, note = {(HPCF machines used: tara.)} }

@inproceedings{ApproxFIMJSM2014, author = {Andrew~M. Raim and Nagaraj~K. Neerchal and Jorge~G. Morel}, title = {Large Cluster Approximation to the Finite Mixture Information Matrix with an Application to Meta-Analysis}, booktitle = {JSM Proceedings, Statistical Computing Section. Alexandria, VA: American Statistical Association}, year = 2014, pages = {4025--4037}, url = { http://www.amstat.org/meetings/jsm/2014/onlineprogram/AbstractDetails.cfm?abstractid=313589 }, preprint = {http://www.umbc.edu/~araim1/pub/ApproxFIMJSM2014.pdf} }

@techreport{pMatlab_HPCF2014, author = {Sarah Swatski}, title = {Investigating the Use of p{M}atlab to Solve the {P}oisson Equation on the Cluster maya}, number = {HPCF--2014--24}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/pMatlab_HPCF2014.pdf}, note = {(HPCF machines used: maya.)} }

@techreport{KalayehHPCF2014, author = {Kourosh~M. Kalayeh}, title = {Parallel Performance Studies for an Elliptic Test problem on the Cluster maya 2013: Using 1-{D} and 2-{D} domain subdivisions}, number = {HPCF--2014--25}, institution = {UMBC High Performance Computing Facility, University of Maryland, Baltimore County}, year = 2014, pdf = {http://userpages.umbc.edu/~gobbert/papers/Kalayeh_HPCF2014.pdf}, note = {(HPCF machines used: maya.)} }

@article{Draganescu_2014, author = {Andrei Draganescu}, journal = {Optimization Methods and Software}, title = {Multigrid Preconditioning of Linear Systems for Semi-smooth {N}ewton Methods Applied to Optimization Problems Constrained by Smoothing Operators}, year = {2014}, volume = {29}, number = {4}, pages = {786-818} }

@misc{McHenryThesis2014, author = {Jonathan~S. McHenry}, title = {\emph{Parallel Regularized Maximum Likelihood Estimation for Proportional Odds Models}}, howpublished = {Ph.D. Thesis, Department of Mathematics and Statistics, University of Maryland, Baltimore County}, year = 2014, note = {(HPCF machines used: maya.)} }

@misc{Nejad_Masters_Thesis, author = {Mahsan Bakhtiari Nejad}, title = {TOPOLOGY OPTIMIZATION BASED ON MORPHING MESH FOR SIMULTANEOUS COMPONENT RELOCATION AND FRAME STRUCTURE.}, howpublished = {M.S.~Thesis, Department of Mechanical Engineering, University of Maryland, Baltimore County}, year = {2014}, note = {(HPCF machines used: tara.)} }